Photosynthetic Reaction Center and PSI

Sequence Alignments

• ProfileAlignment_LD1.fasta:
  Fasta File containing the alignment of the L subunit (bRC) and the D1 subunit (PSII) used for the conservation analysis

• ProfileAlignment_MD2.fasta:
  Fasta File containing the alignment t of the M subunit (bRC) and the D2 subunit (PSII) used for the conservation analysis

• ProfileAlignment_H.fasta:
  Fasta File containing the alignment of the H subunit (bRC) used for the conservation analysis

Profile Hidden Markov Models

• LD1.hmm: HMM File for the subunit L/D1

• MD2.hmm: HMM File for the subunit M/D2

• H.hmm: HMM File for the subunit H