Computational Biochemistry Group
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NCBI: The National Center for Biotechnology Information
EBI: The European Bioinformatics Institute
DDBJ: DNA Data Bank of Japan
KEGG: Kyoto Encyclopedia of Genes and Genomes
Brenda
NAR -- Database Collection
NAR -- Webserver Collection
Protein Data Bank
WebCSD (Cambridge Structural Database)
Crystallography Open Database
Orientations of Proteins in Membranes
Heme Protein Database
eQuilibrator -- thermodynamic analysis of biochemical systems
Phyre2 -- Protein Structure Prediction
BackPhyre -- Protein Structure Prediction
pKa values and BDE server -- iBonD
SignalP
TermiNator-Terminal Editing (like N-terminal methionine excision)
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CCL: Computational Chemistry List
Python Related Science
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PyQuante: Python Quantum Chemistry
cclib -- Interpreting the results of computational chemistry packages
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Computational Crystallography Toolbox
NMRGlue
IPython -- User Interface
BPython -- UserInterface