This example includes all the structure preparations starting from CHARMM output with a common
example script for APBS, MCMap and all MCMap suite subprograms.

You can start the structure preparations and the MCMap simulation with the following command:

        csh master.csh

Adjust the script to define the PATHs for necessary programs before running the calculation (MCMap, APBS).

In order to process the outcome of a simulation and prepare it for visual inspection run the following command:

        csh master.csh 5
