Mon Sep 30 12:03:38 CEST 2019 currently architecture is x86_64 systype: x86_64-ubuntu-16.04.6 update_libtool: 1 update_config_guess_sub: 1 patch system has patch m4 system has m4 g++ system has g++ libxext-dev system has libxext-dev libxmu-dev system has libxmu-dev libxt-dev system has libxt-dev libc6-dev system has libc6-dev libncurses5-dev system has libncurses5-dev libglu1-mesa-dev system has libglu1-mesa-dev libjpeg-dev system has libjpeg-dev mesa-common-dev system has mesa-common-dev libgtk2.0-dev system has libgtk2.0-dev libgnomecanvas2-dev system has libgnomecanvas2-dev AMBERHOME=/data/ullmann/Software/Phenix/amber16 AUTOBUILD_BUILD=/home/ullmann/autobuild/building AUTOBUILD_INSTALLED=/home/ullmann/autobuild/Linux-homer.frontend AUTOBUILD_SOURCES=/home/ullmann/autobuild/building/sources BASH=/bin/bash BASHOPTS=cmdhist:complete_fullquote:extquote:force_fignore:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_ENV=/agh/sw/Modules/init/bash BASH_LINENO=([0]="0") BASH_REMATCH=() BASH_SOURCE=([0]="build-it") BASH_VERSINFO=([0]="4" [1]="3" [2]="48" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='4.3.48(1)-release' BINARY_INSTALL_CMD=www-placement CBIN=/data/ullmann/Software/CCP4/destination/ccp4-7.0/bin CCP4=/data/ullmann/Software/CCP4/destination/ccp4-7.0 CCP4DIR=/data/ullmann/Software/CCP4/destination CCP4I_TCLTK=/data/ullmann/Software/CCP4/destination/ccp4-7.0/bin CCP4I_TOP=/data/ullmann/Software/CCP4/destination/ccp4-7.0/share/ccp4i CCP4_HELPDIR=/data/ullmann/Software/CCP4/destination/ccp4-7.0/help/ CCP4_MASTER=/data/ullmann/Software/CCP4/destination CCP4_OPEN=UNKNOWN CCP4_SCR=/tmp/ullmann CETC=/data/ullmann/Software/CCP4/destination/ccp4-7.0/etc CEXAM=/data/ullmann/Software/CCP4/destination/ccp4-7.0/examples CHTML=/data/ullmann/Software/CCP4/destination/ccp4-7.0/html CINCL=/data/ullmann/Software/CCP4/destination/ccp4-7.0/include CLIB=/data/ullmann/Software/CCP4/destination/ccp4-7.0/lib CLIBD=/data/ullmann/Software/CCP4/destination/ccp4-7.0/lib/data CLIBD_MON=/data/ullmann/Software/CCP4/destination/ccp4-7.0/lib/data/monomers/ COLORFGBG='15;0' CRANK=/data/ullmann/Software/CCP4/destination/ccp4-7.0/share/ccp4i/crank DBUS_SESSION_BUS_ADDRESS=unix:abstract=/tmp/dbus-4apKTgHOoV,guid=cd49463d6ba9b590d044271b5d6e4302 DEFAULTS_PATH=/usr/share/gconf/plasma.default.path DESKTOP_SESSION=plasma DIRSTACK=() DISPLAY=:0 EDITOR=vim ENABLE_GUILE_COOT=yes ENABLE_PYTHON_COOT=yes ENV=/agh/sw/Modules/init/profile.sh EUID=1120358 GDMSESSION=plasma GDM_LANG=en_US GFORTRAN_UNBUFFERED_PRECONNECTED=Y GROUP=ag_ullmann GROUPS=() GS_LIB=/home/ullmann/.fonts GTK2_MODULES=overlay-scrollbar GTK2_RC_FILES=/etc/gtk-2.0/gtkrc:/home/ullmann/.gtkrc-2.0:/home/ullmann/.config/gtkrc-2.0 GTK_MODULES=gail:atk-bridge GTK_RC_FILES=/etc/gtk/gtkrc:/home/ullmann/.gtkrc:/home/ullmann/.config/gtkrc HOME=/home/ullmann HOST=homer.frontend HOSTNAME=homer.frontend HOSTTYPE=x86_64-linux IFS=$' \t\n' KDE_FULL_SESSION=true KDE_MULTIHEAD=false KDE_SESSION_UID=1120358 KDE_SESSION_VERSION=5 KONSOLE_DBUS_SERVICE=:1.169 KONSOLE_DBUS_SESSION=/Sessions/24 KONSOLE_DBUS_WINDOW=/Windows/10 KONSOLE_PROFILE_NAME=Default LANG=en_US.UTF-8 LANGUAGE=en_US LD_LIBRARY_PATH=/data/ullmann/Software/Phenix/amber16/lib:/sw/sci/app/orca/openmpi-2.1.6/lib/:/sw/sci/app/modeller/modeller.9.10//lib/x86_64-intel8:/usr/lib/x86_64-linux-gnu/:/local/ullmann/COMODO/programs/lapackpp-2.5.4/lib LOADEDMODULES= LOGNAME=ullmann LOGS=/home/ullmann/public_html/build-logs/Linux-homer.frontend MACHTYPE=x86_64 MANDATORY_PATH=/usr/share/gconf/plasma.mandatory.path MANPATH=/agh/sw/Modules/share/man:/data/ullmann/Software/CCP4/destination/ccp4-7.0/share/man:/usr/share/man MMCIFDIC=/data/ullmann/Software/CCP4/destination/ccp4-7.0/lib/ccp4/cif_mmdic.lib MODELLER=/sw/sci/app/modeller/modeller.9.10/ MODULEPATH=/agh/sw/Modules/modulefiles MODULEPATH_modshare=/agh/sw/Modules/modulefiles:1 MODULESHOME=/agh/sw/Modules MODULES_CMD=/agh/sw/Modules/libexec/modulecmd.tcl MODULES_USE_COMPAT_VERSION=0 NETCDFHOME=/sw/sci/app/gmt/gmt-4.5.7/netcdf-3.6.3 NIGHTLY_DEST_DIR=/home/ullmann/public_html/software/binaries/nightlies/pre-release OPENMPI=/sw/sci/app/orca/openmpi-2.1.6 OPTERR=1 OPTIND=1 ORCA=/sw/sci/app/orca/orca_4_2_0_linux_x86-64_openmpi216/ OS=Linux OSTYPE=linux PAM_KWALLET5_LOGIN=/tmp/kwallet5_ullmann.socket PATH=/home/ullmann/autobuild/Linux-homer.frontend-pre-release-gtk2/bin:/data/ullmann/Software/Phenix/amber16/bin:/data/ullmann/Software/Phenix/phenix-1.14-3260/build/bin:/data/ullmann/Software/CCP4/destination/arp_warp_8.0/bin/bin-x86_64-Linux:/data/ullmann/Software/CCP4/destination/ccp4-7.0/etc:/data/ullmann/Software/CCP4/destination/ccp4-7.0/bin:.:/home/ullmann/apbs-install/bin:/home/ullmann/apbs-install/share/apbs/tools/bin/:/sw/sci/app/orca/orca_4_2_0_linux_x86-64_openmpi216/:/sw/sci/app/orca/openmpi-2.1.6/bin:/agh/sw/Modules/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/home/ullmann/exe/scripts:/home/ullmann/exe/x86_64-linux:/sw/sci/bin/x86_64-linux:/sw/sci/app/python-modules/bin/:/sw/sci/app/intel/bin:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc PATH_CONNECT=/home/ullmann/Parameter/HBX PDYNAMO_PARAMETERS=/data/ullmann/Software/pdynamo/pDynamo-1.9.0/parameters PDYNAMO_PBABEL=/data/ullmann/Software/pdynamo/pDynamo-1.9.0/pBabel-1.9.0 PDYNAMO_PCORE=/data/ullmann/Software/pdynamo/pDynamo-1.9.0/pCore-1.9.0 PDYNAMO_PMOLECULE=/data/ullmann/Software/pdynamo/pDynamo-1.9.0/pMolecule-1.9.0 PDYNAMO_PMOLECULESCRIPTS=/data/ullmann/Software/pdynamo/pDynamo-1.9.0/pMoleculeScripts-1.9.0 PDYNAMO_ROOT=/data/ullmann/Software/pdynamo/pDynamo-1.9.0 PDYNAMO_SCRATCH=/data/ullmann/Software/pdynamo/pDynamo-1.9.0/scratch PDYNAMO_STYLE=/data/ullmann/Software/pdynamo/pDynamo-1.9.0/parameters/ccsStyleSheets/defaultStyle.css PDYNAMO_VER=1.9.0 PHENIX=/data/ullmann/Software/Phenix/phenix-1.14-3260 PHENIX_VERSION=1.14-3260 PIPESTATUS=([0]="1") PPID=28370 PRINTER=Ullmann_HP_PageWide PROFILEHOME= PS4='+ ' PSE_FILE=/home/ullmann/GIT/parameter/period-table-info.txt PWD=/home/ullmann/autobuild PYTHONPATH=/data/ullmann/Software/Phenix/amber16/lib/python2.7/site-packages:/data/ullmann/Software/pdynamo/pDynamo-1.9.0/pBabel-1.9.0:/data/ullmann/Software/pdynamo/pDynamo-1.9.0/pCore-1.9.0:/data/ullmann/Software/pdynamo/pDynamo-1.9.0/pMolecule-1.9.0:/data/ullmann/Software/pdynamo/pDynamo-1.9.0/pMoleculeScripts-1.9.0:/sw/sci/app/python-modules/lib/python2.7/site-packages/:/home/ullmann/.local/lib/python2.7/site-packages QT_ACCESSIBILITY=1 QT_IM_MODULE=compose QT_LINUX_ACCESSIBILITY_ALWAYS_ON=1 QT_QPA_PLATFORMTHEME=appmenu-qt5 SESSION_MANAGER=local/homer.frontend:@/tmp/.ICE-unix/4048,unix/homer.frontend:/tmp/.ICE-unix/4048 SHELL=/bin/tcsh SHELLOPTS=braceexpand:hashall:interactive-comments SHELL_SESSION_ID=3dc9184888f1400090c7360e4bb5f887 SHLVL=2 SSH_AGENT_PID=3855 SSH_AUTH_SOCK=/tmp/ssh-oKJI9oKf9XVj/agent.3854 SSL_CERT_FILE=/data/ullmann/Software/CCP4/destination/ccp4-7.0/etc/ssl/cacert.pem STABLE_DEST_DIR=/home/ullmann/public_html/software/binaries/stable TEMP=/tmp/user/1120358 TEMPDIR=/tmp/user/1120358 TERM=xterm TMP=/tmp/user/1120358 TMPDIR=/tmp/user/1120358 UID=1120358 USER=ullmann VENDOR=unknown WINDOWID=121634962 XAUTHORITY=/tmp/user/1120358/xauth-1120358-_0 XCURSOR_THEME=breeze_cursors XDG_CONFIG_DIRS=/etc/xdg/xdg-plasma:/etc/xdg:/usr/share/kubuntu-default-settings/kf5-settings XDG_CURRENT_DESKTOP=KDE XDG_DATA_DIRS=/usr/share/plasma:/usr/local/share:/usr/share:/var/lib/snapd/desktop:/var/lib/snapd/desktop XDG_GREETER_DATA_DIR=/var/lib/lightdm-data/ullmann XDG_RUNTIME_DIR=/run/user/1120358 XDG_SEAT=seat0 XDG_SEAT_PATH=/org/freedesktop/DisplayManager/Seat0 XDG_SESSION_DESKTOP=plasma XDG_SESSION_ID=c2 XDG_SESSION_PATH=/org/freedesktop/DisplayManager/Session0 XDG_SESSION_TYPE=x11 XDG_VTNR=7 _=']' arch=x86_64 architecture=x86_64 build_coot_prerelease=1 build_type=gtk2-python dep=libgnomecanvas2-dev dep_list=$'\n patch\n m4\n g++\n libxext-dev\n libxmu-dev\n libxt-dev\n libc6-dev\n libncurses5-dev\n libglu1-mesa-dev \n libjpeg-dev\n mesa-common-dev\n libgtk2.0-dev\n libgnomecanvas2-dev' dist_name=ubuntu dist_ver=16.04.6 do_nightlies=1 fallback_coot_version=coot-0.4 have_malloc=1 manpath=/data/ullmann/Software/CCP4/destination/ccp4-7.0/share/man:/usr/share/man no_proxy=.corp.net.com processor=GNU/Linux proxy_host=myproxy.com proxy_port=800 publish=: publish_logs=: run_second_test=true run_tests=false script_version=5.35 shared_lib_ext=so shared_static_flag=--disable-shared specs=/home/ullmann/autobuild/build-scripts/homer.frontend-specials systype=x86_64-ubuntu-16.04.6 update_config_guess_sub=1 update_libtool=1 use_proxy= warpbin=/data/ullmann/Software/CCP4/destination/arp_warp_8.0/bin/bin-x86_64-Linux warpdoc=/data/ullmann/Software/CCP4/destination/arp_warp_8.0/manual _moduleraw () { unset _mlre _mlIFS _mlshdbg; if [ "${MODULES_SILENT_SHELL_DEBUG:-0}" = '1' ]; then case "$-" in *v*x*) set +vx; _mlshdbg='vx' ;; *v*) set +v; _mlshdbg='v' ;; *x*) set +x; _mlshdbg='x' ;; *) _mlshdbg='' ;; esac; fi; if [ -n "${IFS+x}" ]; then _mlIFS=$IFS; fi; IFS=' '; for _mlv in ${MODULES_RUN_QUARANTINE:-}; do if [ "${_mlv}" = "${_mlv##*[!A-Za-z0-9_]}" -a "${_mlv}" = "${_mlv#[0-9]}" ]; then if [ -n "`eval 'echo ${'$_mlv'+x}'`" ]; then _mlre="${_mlre:-}${_mlv}_modquar='`eval 'echo ${'$_mlv'}'`' "; fi; _mlrv="MODULES_RUNENV_${_mlv}"; _mlre="${_mlre:-}${_mlv}='`eval 'echo ${'$_mlrv':-}'`' "; fi; done; if [ -n "${_mlre:-}" ]; then eval `eval ${_mlre}/usr/bin/tclsh /agh/sw/Modules/libexec/modulecmd.tcl bash '"$@"'`; else eval `/usr/bin/tclsh /agh/sw/Modules/libexec/modulecmd.tcl bash "$@"`; fi; _mlstatus=$?; if [ -n "${_mlIFS+x}" ]; then IFS=$_mlIFS; else unset IFS; fi; if [ -n "${_mlshdbg:-}" ]; then set -$_mlshdbg; fi; unset _mlre _mlv _mlrv _mlIFS _mlshdbg; return $_mlstatus } fixup_libcurl () { sed s,-L/usr/lib,, curl-config > curl-config.tmp; mv curl-config.tmp curl-config; sed s,-L/usr/lib,, lib/libcurl.la > lib/libcurl.la.tmp; mv lib/libcurl.la.tmp lib/libcurl.la } make_tar () { echo in make_tar args: $1 $2; echo in make_tar: in dir: $PWD; tar_dir=$1; tar_file_name=$2; cd $install_top_dir/..; if [ -e $tar_dir ]; then echo taring nightly... from $tar_dir to $tar_file_name; tar czf $tar_file_name $tar_dir; status=$?; if [ "$status" != 0 ]; then echo ERROR:: tar czf $tar_file_name $tar_dir failed.; echo ERROR:: while in directory $(pwd); echo ERROR:: tar failed > $tar_file_name.md5sum; rm $tar_file_name; else md5sum $tar_file_name > $tar_file_name.md5sum; /bin/ls -l $tar_file_name >> $tar_file_name.md5sum; echo done tar successfully.; fi; else echo ERROR:: tar target directory $tar_dir does not exist.; fi } mkdir_maybe () { dir=$1; if [ ! -e "$dir" ]; then mkdir $dir; fi } module () { _moduleraw "$@" 2>&1 } my_exit () { exit_arg=$1; shift; extra_args=$*; echo fail-build $extra_args > $LOGS/$build-status; if [ -e $LOGS/$test-status ]; then rm $LOGS/$test-status; fi; exit $exit_arg } post_install_slim () { echo we are slimming directory $1; fat_dir="$1"; cleaned_dir="$2"; clear_type="$3"; echo fat_dir is $fat_dir; echo clear_type is $clear_type; echo cleaned_dir is $cleaned_dir; mkdir_maybe $cleaned_dir; mkdir_maybe $cleaned_dir/bin; mkdir_maybe $cleaned_dir/lib; if [ "$ENABLE_PYTHON_COOT" = yes ]; then mkdir_maybe $cleaned_dir/include; mkdir_maybe $cleaned_dir/include/$python_version; fi; lib_sos=`cd $fat_dir && ls -1 lib/lib*.so*`; lib_as=`cd $fat_dir && ls -1 lib/lib*.a`; if [ "$clear_type" = "clear-dynamic" ]; then keep_lib_archs="$lib_as"; fi; if [ "$clear_type" = "clear-static" ]; then keep_lib_archs="$lib_sos"; fi; file_list="etc info man share libexec libexec/coot-bin libexec/findwaters-bin libexec/findligand-bin libexec/mini-rsr-bin libexec/density-score-by-residue-bin bin/coot bin/findwaters bin/findligand bin/guile bin/coot-density-score-by-residue bin/coot-available-comp-id bin/coot-compare-dictionaries bin/coot-dictionary-bond-distributions bin/coot-make-shelx-restraints bin/lidia bin/curl $keep_lib_archs"; if [ "$ENABLE_PYTHON_COOT" = yes ]; then file_list="$file_list html lib/$python_version include/$python_version"; fi; echo rsyncing...; for file in $file_list; do dn=$(dirname $file); if [ -e $fat_dir/$file ]; then rsync -axr $fat_dir/$file $cleaned_dir/$dn; else echo $fat_dir/$file does not exist; fi; done; echo done rsyncing. } setup_ccp4 () { if test "$OS" = Linux; then setup_file=/y/programs/xtal/ccp4-6.0.2/ccp4-6.0.2/include/ccp4.setup-sh; if test -e $setup_file; then . $setup_file; else if [ "$systype" = x86_64-centos-6 ]; then setup_file=/home/emsley/ccp4/setup-scripts/sh/ccp4.setup; else if [ "$systype" = x86_64-centos-5 ]; then setup_file=/home/emsley/ccp4/ccp4-6.2.0/include/ccp4.setup-sh; else setup_file=setup-ccp4; fi; fi; if test -e $setup_file; then echo evaluating $setup_file; . $setup_file; else echo WARNING:: ccp4 setup file $setup_file does not exist.; fi; fi; fi; if test "$OS" = Darwin; then . /usr/local/ccp4-6.0.2/bin/ccp4.setup-sh; fi } ssh_copy () { if [ "$do_ssh_copy" = true ]; then dir=public_html/software/binaries/nightlies/pre-release/; echo ssh_copy copying over files using $HOME/bin/sput-with-dir $bin_tar_file $dir; $HOME/bin/sput-with-dir $bin_tar_file $dir; if [ -e $bin_tar_file.md5sum ]; then $HOME/bin/sput-with-dir $bin_tar_file.md5sum dir; fi; else echo Not ssh copying file to York, $domainname; fi } ssh_copy_logs_to_biop () { local_log_dir=$1; target_dir=$2; if [ "$do_ssh_biop_copy" = true ]; then echo copying over log files to Biop...; target_dir=$2; $HOME/bin/sput-with-dir $local_log_dir $target_dir; else echo Not ssh copying log files to biop; fi } ssh_copy_to_biop () { bin_tar_file=$1; if [ "$do_ssh_biop_copy" = true ]; then target_dir=public_html/coot/software/binaries/pre-releases/; echo copying over files to Biop: $HOME/bin/sput-with-dir $bin_tar_file $target_dir; $HOME/bin/sput-with-dir $bin_tar_file $target_dir; if [ -e $bin_tar_file.md5sum ]; then echo and also: $HOME/bin/sput-with-dir $bin_tar_file.md5sum $target_dir; $HOME/bin/sput-with-dir $bin_tar_file.md5sum $target_dir; fi; else echo Not ssh copying file to biop; fi } switchml () { typeset swfound=1; if [ "${MODULES_USE_COMPAT_VERSION:-0}" = '1' ]; then typeset swname='main'; if [ -e /agh/sw/Modules/libexec/modulecmd.tcl ]; then typeset swfound=0; unset MODULES_USE_COMPAT_VERSION; fi; else typeset swname='compatibility'; if [ -e /agh/sw/Modules/libexec/modulecmd-compat ]; then typeset swfound=0; MODULES_USE_COMPAT_VERSION=1; export MODULES_USE_COMPAT_VERSION; fi; fi; if [ $swfound -eq 0 ]; then echo "Switching to Modules $swname version"; source /agh/sw/Modules/init/bash; else echo "Cannot switch to Modules $swname version, command not found"; return 1; fi } test_coot () { echo testing with greg; echo testing with greg 1>&2; echo currently we are here:; pwd; date; if [ "$1" != "" ]; then coot_binary=$1; else coot_binary=$install_top_dir/libexec/coot-bin; fi; if test "$run_tests" = true; then COOT_PYTHON_DIR=$install_top_dir/share/coot/python; PYTHONPATH=$COOT_PYTHON_DIR; PYTHONHOME=$install_top_dir; export COOT_PYTHON_DIR; export PYTHONPATH; export PYTHONHOME; if [ ! -d greg-tests ]; then echo greg-tests dir missing in this directory:; pwd; return 1; fi; setup_ccp4; cat > command-line-greg.scm <&2; echo currently we are here:; pwd; if test "$run_tests" = true; then COOT_PYTHON_DIR=$install_top_dir/share/coot/python; PYTHONPATH=$COOT_PYTHON_DIR; PYTHONHOME=$install_top_dir; export COOT_PYTHON_DIR; export PYTHONPATH; export PYTHONHOME; echo $install_top_dir/bin/coot --no-graphics --script python-tests/coot_unittest.py; $install_top_dir/bin/coot --no-graphics --script python-tests/coot_unittest.py; status=$?; if [ $status = 0 ]; then echo test_coot_python: coot test passed; return 0; else echo test_coot_python: coot test failed; return 1; fi; else return 1; fi } INFO:: MACHTYPE is x86_64 INFO:: systype is x86_64-ubuntu-16.04.6 g++ (Ubuntu 5.4.0-6ubuntu1~16.04.11) 5.4.0 20160609 Copyright (C) 2015 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. new version path need_guile_unused_values_patch is true Testing version of make GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. using 8 processors in compilation MAKE set to make -j8 testing for patch testing awk type (prefer GNU awk) GNU Awk 4.1.3, API: 1.1 (GNU MPFR 3.1.4, GNU MP 6.1.0) Copyright (C) 1989, 1991-2015 Free Software Foundation. This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program. If not, see http://www.gnu.org/licenses/. good, you have an awk from GNU. Date: 2019-09-30__T10_03_38 checking wget which wget /usr/bin/wget pre_release_files_html /home/ullmann/autobuild/building/sources/index-pre-release.html coot_version_tmp : right : clever coot_version succeeded, setting coot_version to right from extraction debug:: wget -P /home/ullmann/autobuild/building/sources -O /home/ullmann/autobuild/building/sources/index.html -o /home/ullmann/autobuild/building/sources/wget-e.s.p.log http://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/source/pre-releases/ INFO:: building pre-release and coot_version_pre is right DEBUG:: set coot_source_tar_file to http://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/source/pre-releases/right.tar.gz INFO:: set the target destination for binary tar file (BINARY_TAR_DEST_DIR) to /home/ullmann/public_html/software/binaries/nightlies/pre-release INFO:: binary tar destination dir: BINARY_TAR_DEST_DIR is /home/ullmann/public_html/software/binaries/nightlies/pre-release coot_version_pre is right build_coot_prerelease: 1 release_server_dir http://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/source/releases coot_version right testing for install_top_dir: /home/ullmann/autobuild/Linux-homer.frontend-pre-release-gtk2-python INFO:: /home/ullmann/autobuild/Linux-homer.frontend-pre-release-gtk2-python exists already. done testing for /home/ullmann/autobuild/Linux-homer.frontend-pre-release-gtk2-python ccp4_system_type linux fftw should be built curl should be built system does not have libidn installation does not have libidn, libcurl should be built also pkg-config is /usr/bin/pkg-config pkg-config is new enough 0.29.1 COOT_CCP4_PACKAGES PKG_CONFIG_PATH is now /home/ullmann/autobuild/Linux-homer.frontend-pre-release-gtk2-python/lib/pkgconfig system/installation has freetype2 glib is not up to date, rebuild glib - maybe. :::::::: gtk version is at least 2.10 :::::::: gtk version is 2.24.30 gtk is new enough for guile-gtk freeglut should be built libtool should be built system has libgnomecanvas gmp should be built readline needs to be built atempting to run installed guile-config (this may fail, that's OK). guile-config failed. guile should be built guile-gui needs to be installed guile-lib needs to be installed testing for greg using guile greg status 127 greg should be built python should be built gsl should be built gtkglext should be built installation does not have guile-gtk guile-gtk.h not found, guile-gtk should be built 2.30.3 goocanvas: recent enough gtk+ version goocanvas: recent enough cairo version goocanvas: goocanvas_args set to --with-goocanvas-prefix=/home/ullmann/autobuild/Linux-homer.frontend-pre-release-gtk2-python installation has no mmdb, build mmdb. SSM not found - needs to be built mmdb needs to be built, so clipper needs building. BUILDING: libccp4